Here you will find a description of the organization and functionality of the different components of the main SKMATLAS analysis page.

Since the database provides two methods of analysis, the analysis page is divided into two types.

The SKMATLAS analysis page of related network consists mainly of 3 sections that warrant descriptions.Figure 1 shows the different sections of the SKMATLAS analysis page of related network with their respective components.

Figure 1.SKMATLAS analysis page of related Network. The page is organized in 3 main sections: A. Navigation bar. B.Table of gene list. C.Network of related network.

Each section is described separately below.

A: Navigation bar

This section (Figure 1A) covers the navigation bar, which includes the following two tabs:

In this tab, the analysis page shows one table(Figure 1B) and one plot(Figure 1C). The table lists all genes selected by our standard process. All of these genes are positively correlated in RNA-seq in all species, significantly(adjust p-value<0.05 in all species). The plot column links to the network plot(Figure 1C) which shows a relevant network of all genes associated with this gene.

Figure 2. Search a gene to show a related network of all genes associated with this gene.

Using search box to search a gene then a related network of all genes associated with this gene showed blow the search box.

There are five ways to draw a heat map.

Figure 3. Five ways to draw a heat map.

The SKMATLAS analysis page of Do Heatmap consists mainly of 3 sections that warrant descriptions.Figure 3 shows the different sections of the SKMATLAS analysis page of related network with their respective components.

Figure 4.SKMATLAS analysis page of Do Heatmap. In different ways to draw the heat map, the layout of the pages is the same which organized in 3 main sections: A. Search box. B.Heat map. C.Table of Gene.

A.Select a specie and input a list of gene split by “,”

B.In this heat map, The x-axis is sorted in chronological order of development and the y-axis genes inputted in search box and the color of cell represents the amount of expression.

C.Table of genes inputted in search box

A.Select a specie and input a miRNA ID

B.In this heat map, the x-axis is sorted in chronological order of development and the y-axis is target genes for this miRNA and the color of cell represents the amount of expression.

C.Table of target genes for this miRNA

A.Select a specie and locate a chromosome range

B.In this heat map, the x-axis is sorted in chronological order of development and the y-axis is genes in this GO term&KEGG pathway and the color of cell represents the amount of expression.

C.Table of genes in this GO term&KEGG pathway.